Index

A

apply_response_functions() (in module exo_skryer.instru_convolve)

apply_response_functions_cached() (in module exo_skryer.instru_convolve) apply_runtime_env() (in module exo_skryer.help_runtime)

B

bandpass_bin_edges() (in module exo_skryer.registry_bandpass) bandpass_coefficients_padded() (in module exo_skryer.registry_bandpass) bandpass_indices_padded() (in module exo_skryer.registry_bandpass) bandpass_is_boxcar() (in module exo_skryer.registry_bandpass) bandpass_norms() (in module exo_skryer.registry_bandpass) bandpass_num_bins() (in module exo_skryer.registry_bandpass) bandpass_valid_lengths() (in module exo_skryer.registry_bandpass) bandpass_wavelengths_padded() (in module exo_skryer.registry_bandpass)

bandpass_weights_padded() (in module exo_skryer.registry_bandpass) Barstow() (in module exo_skryer.vert_Tp) bin_edges (exo_skryer.registry_bandpass.BinConvolutionEntry attribute) BinConvolutionEntry (class in exo_skryer.registry_bandpass) build_compute_mu() (in module exo_skryer.vert_mu) build_constant_vmr_kernel() (in module exo_skryer.vert_chem) build_forward_model() (in module exo_skryer.build_model) build_opacities() (in module exo_skryer.build_opacities)

C

CE_atmodeller() (in module exo_skryer.vert_chem) CE_easychem_jax() (in module exo_skryer.vert_chem) CE_fastchem_grid_jax() (in module exo_skryer.vert_chem) CE_fastchem_jax() (in module exo_skryer.vert_chem) CE_rate_jax() (in module exo_skryer.vert_chem) cia_kept_pair_indices() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_log10_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_master_wavelength() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_pair_species_i() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_pair_species_j() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_retained_log10_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_retained_sigma_cube() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_retained_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_runtime_species_order() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_sigma_cube() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_species_names() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_temperature_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) cia_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) CiaRegistryEntry (class in exo_skryer.build_opacities) (class in exo_skryer.registry_cia) ck_g_points() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_g_points_1d() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_g_weights() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_g_weights_1d() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_log10_pressure_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_log10_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_master_wavelength() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_pressure_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_runtime_species_order() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck)

ck_sigma_cube() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_species_names() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_temperature_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) ck_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) CKRegistryEntry (class in exo_skryer.build_opacities) (class in exo_skryer.registry_ck) clear_cloud_nk_data() (in module exo_skryer.registry_cloud) clear_kk_cache() (in module exo_skryer.registry_cloud) clear_nasa9_cache() (in module exo_skryer.rate_jax) cloud_nk_k() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cloud) cloud_nk_n() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cloud) cloud_nk_wavelength() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cloud) clr_samples_to_vmr() (in module exo_skryer.build_chem) compute_albedo_spectrum_1d() (in module exo_skryer.RT_alb_1D) compute_cia_opacity() (in module exo_skryer.opacity_cia) compute_ck_opacity() (in module exo_skryer.opacity_ck) compute_ck_opacity_perspecies() (in module exo_skryer.opacity_ck) compute_cloud_efficiencies() (in module exo_skryer.opacity_cloud) compute_cloud_opacity() (in module exo_skryer.opacity_cloud) compute_emission_spectrum_1d_ck() (in module exo_skryer.RT_em_1D_ck) compute_emission_spectrum_1d_os() (in module exo_skryer.RT_em_1D_os) compute_hminus_bf_opacity() (in module exo_skryer.opacity_special) compute_hminus_ff_opacity() (in module exo_skryer.opacity_special) compute_kk_grid_cache() (in module exo_skryer.registry_cloud) compute_line_opacity() (in module exo_skryer.opacity_line) compute_mu() (in module exo_skryer.vert_mu) compute_ray_opacity() (in module exo_skryer.opacity_ray) compute_special_opacity() (in module exo_skryer.opacity_special) compute_transit_depth_1d_ck() (in module exo_skryer.RT_trans_1D_ck) compute_transit_depth_1d_ck_trans() (in module exo_skryer.RT_trans_1D_ck_trans) compute_transit_depth_1d_os() (in module exo_skryer.RT_trans_1D_os) const_profile() (in module exo_skryer.vert_cloud) constant_mu() (in module exo_skryer.vert_mu) constant_vmr() (in module exo_skryer.vert_chem) constant_vmr_clr() (in module exo_skryer.vert_chem) cross_sections (exo_skryer.build_opacities.CiaRegistryEntry attribute) (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.build_opacities.LineRegistryEntry attribute) (exo_skryer.build_opacities.RayRegistryEntry attribute) (exo_skryer.registry_cia.CiaRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) (exo_skryer.registry_line.LineRegistryEntry attribute) (exo_skryer.registry_ray.RayRegistryEntry attribute)

D

deck_and_powerlaw() (in module exo_skryer.opacity_cloud)

direct_nk() (in module exo_skryer.opacity_cloud) dry_convective_adjustment() (in module exo_skryer.vert_Tp)

E

exo_skryer.aux_functions module exo_skryer.build_chem module exo_skryer.build_model module exo_skryer.build_opacities module exo_skryer.ck_mix_PRAS module exo_skryer.ck_mix_RORR module exo_skryer.data_constants module exo_skryer.help_io module exo_skryer.help_print module exo_skryer.help_runtime module exo_skryer.instru_convolve module exo_skryer.kernel_registry module exo_skryer.kk_schemes module exo_skryer.lxmie_mod module exo_skryer.mie_schemes module exo_skryer.opacity_cia module exo_skryer.opacity_ck module exo_skryer.opacity_cloud module exo_skryer.opacity_line module exo_skryer.opacity_ray module exo_skryer.opacity_special module exo_skryer.rate_jax module exo_skryer.read_obs module

exo_skryer.read_stellar module exo_skryer.read_yaml module exo_skryer.refraction module exo_skryer.registry_bandpass module exo_skryer.registry_cia module exo_skryer.registry_ck module exo_skryer.registry_cloud module exo_skryer.registry_line module exo_skryer.registry_ray module exo_skryer.registry_special module exo_skryer.RT_alb_1D module exo_skryer.RT_em_1D_ck module exo_skryer.RT_em_1D_os module exo_skryer.RT_em_schemes module exo_skryer.RT_trans_1D_ck module exo_skryer.RT_trans_1D_ck_trans module exo_skryer.RT_trans_1D_os module exo_skryer.run_retrieval module exo_skryer.vert_alt module exo_skryer.vert_chem module exo_skryer.vert_cloud module exo_skryer.vert_mu module exo_skryer.vert_Tp module exponential_decay_profile() (in module exo_skryer.vert_cloud)

F

F18_cloud() (in module exo_skryer.opacity_cloud) f18_skew_cloud() (in module exo_skryer.opacity_cloud)

format_duration() (in module exo_skryer.help_print) (in module exo_skryer.run_retrieval)

G

g_at_z() (in module exo_skryer.vert_alt) g_over_RT() (exo_skryer.rate_jax.NASA9ThermoJAX method) (exo_skryer.rate_jax.RateJAX method) g_points (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) g_weights (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) get_bandpass_cache() (in module exo_skryer.instru_convolve)

get_cloud_nk_data() (in module exo_skryer.registry_cloud) get_emission_solver() (in module exo_skryer.RT_em_schemes) get_fastchem_grid_cache_info() (in module exo_skryer.vert_chem) get_kk_cache_stats() (in module exo_skryer.registry_cloud) get_nasa9_cache() (in module exo_skryer.rate_jax) get_or_create_kk_cache() (in module exo_skryer.registry_cloud) grey_const_cloud() (in module exo_skryer.opacity_cloud) grey_profile_cloud() (in module exo_skryer.opacity_cloud) Guillot() (in module exo_skryer.vert_Tp)

H

has_bandpass_data() (in module exo_skryer.registry_bandpass) has_cia_data() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) has_ck_data() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) has_cloud_nk_data() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cloud) has_line_data() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) has_ray_data() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) has_special_data() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_special) HCNO_poly8_CO() (exo_skryer.rate_jax.RateJAX method)

HCNO_poly8_H2O() (exo_skryer.rate_jax.RateJAX method) HCO_poly6_CO() (exo_skryer.rate_jax.RateJAX method) HCO_poly6_H2O() (exo_skryer.rate_jax.RateJAX method) hminus_bf_log10_sigma_table() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_special) hminus_ff_log10_sigma_table() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_special) hminus_log10_temperature_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_special) hminus_temperature_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_special) hopf_function() (in module exo_skryer.vert_Tp) hypsometric() (in module exo_skryer.vert_alt) hypsometric_variable_g() (in module exo_skryer.vert_alt) hypsometric_variable_g_pref() (in module exo_skryer.vert_alt)

I

idx (exo_skryer.build_opacities.CiaRegistryEntry attribute) (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.build_opacities.LineRegistryEntry attribute) (exo_skryer.build_opacities.RayRegistryEntry attribute) (exo_skryer.registry_cia.CiaRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) (exo_skryer.registry_line.LineRegistryEntry attribute) (exo_skryer.registry_ray.RayRegistryEntry attribute) indices (exo_skryer.registry_bandpass.BinConvolutionEntry attribute) infer_clr_keys() (in module exo_skryer.build_chem) infer_log10_vmr_keys() (in module exo_skryer.build_chem)

infer_trace_species() (in module exo_skryer.build_chem) init_atmodeller_if_needed() (in module exo_skryer.build_chem) init_element_potentials_if_needed() (in module exo_skryer.build_chem) init_fastchem_grid_if_needed() (in module exo_skryer.build_chem) init_quench_approx_if_needed() (in module exo_skryer.build_chem) is_atmodeller_cache_loaded() (in module exo_skryer.vert_chem) is_element_potentials_cache_loaded() (in module exo_skryer.vert_chem) is_fastchem_grid_cache_loaded() (in module exo_skryer.vert_chem) is_nasa9_cache_loaded() (in module exo_skryer.rate_jax) is_quench_approx_cache_loaded() (in module exo_skryer.vert_chem) isothermal() (in module exo_skryer.vert_Tp)

K

kk_n_from_k_wavelength_um() (in module exo_skryer.kk_schemes) kk_n_from_k_wavenumber() (in module exo_skryer.kk_schemes) kk_n_from_k_wavenumber_cached() (in module exo_skryer.kk_schemes) kk_n_from_k_wavenumber_fast() (in module exo_skryer.kk_schemes) kprime0() (exo_skryer.rate_jax.RateJAX method)

kprime1() (exo_skryer.rate_jax.RateJAX method) kprime2() (exo_skryer.rate_jax.RateJAX method) kprime3() (exo_skryer.rate_jax.RateJAX method) kprime4() (exo_skryer.rate_jax.RateJAX method) kprime5() (exo_skryer.rate_jax.RateJAX method) kprime6() (exo_skryer.rate_jax.RateJAX method)

L

latin_hypercube() (in module exo_skryer.aux_functions) line_log10_pressure_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_log10_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_master_wavelength() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_pressure_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_runtime_species_order() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_sigma_cube() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_species_names() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_temperature_grid() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) line_temperature_grids() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) LineRegistryEntry (class in exo_skryer.build_opacities) (class in exo_skryer.registry_line)

load_atmodeller_cache() (in module exo_skryer.vert_chem) load_bandpass_registry() (in module exo_skryer.registry_bandpass) load_cia_registry() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_cia) load_ck_registry() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ck) load_cloud_nk_data() (in module exo_skryer.registry_cloud) load_element_potentials_cache() (in module exo_skryer.vert_chem) load_fastchem_grid_cache() (in module exo_skryer.vert_chem) load_line_registry() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_line) load_nasa9_cache() (in module exo_skryer.rate_jax) load_nasa9_if_needed() (in module exo_skryer.build_chem) load_quench_approx_cache() (in module exo_skryer.vert_chem) load_ray_registry() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) load_special_registry() (in module exo_skryer.registry_special) lxmie() (in module exo_skryer.mie_schemes) lxmie_jax() (in module exo_skryer.lxmie_mod) lxmie_jax_vmap() (in module exo_skryer.lxmie_mod)

M

madt() (in module exo_skryer.mie_schemes) main() (in module exo_skryer.run_retrieval) MandS() (in module exo_skryer.vert_Tp) master_wavelength() (in module exo_skryer.build_opacities) master_wavelength_cut() (in module exo_skryer.build_opacities) maybe_refraction_cutoff_mask() (in module exo_skryer.refraction) method (exo_skryer.registry_bandpass.BinConvolutionEntry attribute) Milne() (in module exo_skryer.vert_Tp) mix_k_tables_pras() (in module exo_skryer.ck_mix_PRAS) mix_k_tables_rorr() (in module exo_skryer.ck_mix_RORR) Modified_Guillot() (in module exo_skryer.vert_Tp) Modified_Milne() (in module exo_skryer.vert_Tp) module exo_skryer.aux_functions exo_skryer.build_chem exo_skryer.build_model exo_skryer.build_opacities exo_skryer.ck_mix_PRAS exo_skryer.ck_mix_RORR exo_skryer.data_constants exo_skryer.help_io exo_skryer.help_print exo_skryer.help_runtime exo_skryer.instru_convolve exo_skryer.kernel_registry exo_skryer.kk_schemes exo_skryer.lxmie_mod exo_skryer.mie_schemes exo_skryer.opacity_cia exo_skryer.opacity_ck exo_skryer.opacity_cloud exo_skryer.opacity_line exo_skryer.opacity_ray exo_skryer.opacity_special exo_skryer.rate_jax exo_skryer.read_obs exo_skryer.read_stellar exo_skryer.read_yaml exo_skryer.refraction exo_skryer.registry_bandpass exo_skryer.registry_cia exo_skryer.registry_ck exo_skryer.registry_cloud exo_skryer.registry_line exo_skryer.registry_ray exo_skryer.registry_special exo_skryer.RT_alb_1D exo_skryer.RT_em_1D_ck exo_skryer.RT_em_1D_os exo_skryer.RT_em_schemes exo_skryer.RT_trans_1D_ck exo_skryer.RT_trans_1D_ck_trans exo_skryer.RT_trans_1D_os exo_skryer.run_retrieval exo_skryer.vert_alt exo_skryer.vert_chem exo_skryer.vert_cloud exo_skryer.vert_mu exo_skryer.vert_Tp

N

name (exo_skryer.build_opacities.CiaRegistryEntry attribute) (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.build_opacities.LineRegistryEntry attribute) (exo_skryer.build_opacities.RayRegistryEntry attribute) (exo_skryer.registry_cia.CiaRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) (exo_skryer.registry_line.LineRegistryEntry attribute) (exo_skryer.registry_ray.RayRegistryEntry attribute)

NASA9ThermoJAX (class in exo_skryer.rate_jax) newton_raphson_bounded() (exo_skryer.rate_jax.RateJAX class method) nk_f18_blend() (in module exo_skryer.opacity_cloud) no_cloud() (in module exo_skryer.vert_cloud) norm (exo_skryer.registry_bandpass.BinConvolutionEntry attribute)

P

pchip_1d() (in module exo_skryer.aux_functions) picket_fence() (in module exo_skryer.vert_Tp) prepare_chemistry_kernel() (in module exo_skryer.build_chem) pressures (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.build_opacities.LineRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) (exo_skryer.registry_line.LineRegistryEntry attribute)

print_cfg() (in module exo_skryer.help_print)

Q

quench_approx() (in module exo_skryer.vert_chem)

R

RateJAX (class in exo_skryer.rate_jax) ray_master_wavelength() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) ray_nd_ref() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) ray_nm1_table() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) ray_pick_arrays() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) ray_refractivity_coeff_table() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) ray_runtime_species_order() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) ray_sigma_linear_table() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) ray_sigma_table() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray)

ray_species_names() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_ray) rayleigh() (in module exo_skryer.mie_schemes) RayRegistryEntry (class in exo_skryer.build_opacities) (class in exo_skryer.registry_ray) read_master_wl() (in module exo_skryer.build_opacities) read_obs_data() (in module exo_skryer.read_obs) read_stellar_spectrum() (in module exo_skryer.read_stellar) read_yaml() (in module exo_skryer.read_yaml) refraction_cutoff_mask() (in module exo_skryer.refraction) reset_bandpass_registry() (in module exo_skryer.registry_bandpass) reset_registry() (in module exo_skryer.registry_cia) (in module exo_skryer.registry_ck) (in module exo_skryer.registry_line) (in module exo_skryer.registry_ray) (in module exo_skryer.registry_special) resolve() (in module exo_skryer.kernel_registry) resolve_obs_path() (in module exo_skryer.read_obs)

S

save_inferencedata() (in module exo_skryer.help_io) save_observed_data_csv() (in module exo_skryer.help_io) set_cloud_nk_data() (in module exo_skryer.registry_cloud) simpson() (in module exo_skryer.aux_functions) simpson_padded() (in module exo_skryer.aux_functions) slab_profile() (in module exo_skryer.vert_cloud)

solve_alpha_eaa() (in module exo_skryer.RT_em_schemes) solve_profile() (exo_skryer.rate_jax.RateJAX method) solve_rest() (exo_skryer.rate_jax.RateJAX method) solve_toon89_picaso() (in module exo_skryer.RT_em_schemes) special_master_wavelength() (in module exo_skryer.build_opacities) (in module exo_skryer.registry_special)

T

temperatures (exo_skryer.build_opacities.CiaRegistryEntry attribute) (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.build_opacities.LineRegistryEntry attribute) (exo_skryer.registry_cia.CiaRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) (exo_skryer.registry_line.LineRegistryEntry attribute)

to_inferencedata() (in module exo_skryer.help_io) top() (exo_skryer.rate_jax.RateJAX static method)

V

validate_clr_params() (in module exo_skryer.build_chem)

validate_log10_vmr_params() (in module exo_skryer.build_chem)

W

wavelengths (exo_skryer.build_opacities.CiaRegistryEntry attribute) (exo_skryer.build_opacities.CKRegistryEntry attribute) (exo_skryer.build_opacities.LineRegistryEntry attribute) (exo_skryer.build_opacities.RayRegistryEntry attribute) (exo_skryer.registry_bandpass.BinConvolutionEntry attribute) (exo_skryer.registry_cia.CiaRegistryEntry attribute) (exo_skryer.registry_ck.CKRegistryEntry attribute) (exo_skryer.registry_line.LineRegistryEntry attribute) (exo_skryer.registry_ray.RayRegistryEntry attribute)

weights (exo_skryer.registry_bandpass.BinConvolutionEntry attribute)

Z

zero_cia_opacity() (in module exo_skryer.opacity_cia) zero_ck_opacity() (in module exo_skryer.opacity_ck) zero_cloud_opacity() (in module exo_skryer.opacity_cloud)

zero_line_opacity() (in module exo_skryer.opacity_line) zero_ray_opacity() (in module exo_skryer.opacity_ray) zero_special_opacity() (in module exo_skryer.opacity_special)